PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07392_BGI-A2_v1.0
Common NameF383_04453
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 477aa    MW: 53756.4 Da    PI: 5.1197
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07392_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.7e-35241142101
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl k+y++++d+++++++sws++++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++
  Cotton_A_07392_BGI-A2_v1.0  24 FLLKTYDMVDDSATDDIVSWSSHNKSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANE 97 
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkk 101
                                  F kg+k+ll++i+rkk
  Cotton_A_07392_BGI-A2_v1.0  98 DFVKGQKHLLKNIHRKK 114
                                 ***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.8E-6220113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-3620113IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.9E-3821113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MASTVPLTSA AGSGGGGGCG VAPFLLKTYD MVDDSATDDI VSWSSHNKSF VVWNPPEFAR  60
LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFANEDFV KGQKHLLKNI HRKKPIHSHS  120
NPQGSFVDPE RAGFEEEIER LSREKTALEA NVLRFREERS AAKHQIEELT LRADQMEQRQ  180
ETLFNFLEKA VQDSAFVEHL VRKIESMESM DVTAYNKKRR LPQIDRIEPV GEICLLDNNN  240
NSSSSRAEFG NIFHQDFSDK LRLELSPAVS DIHLVSQSTQ SSDEDGVSPR IRISEGEPKD  300
AYMRSEGLLF APERLDLSES SRSFTLQQSL NSSDEPDNHI SCLLNLTLAS SSSQVNRSPS  360
LTMMSQLGQE IGKDPKSRSN ANSKDSDTRA SGNSRNMING EATLSSPKED LNTNQKPATP  420
PVRVNDVFWE RFLTERPDSS DDEESNSDHQ ANPYKEDDKS STYGLARNAK NMEQLNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-241211317129Heat shock factor protein 1
5d5v_B6e-241211317129Heat shock factor protein 1
5d5v_D6e-241211317129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486210.0KJ748621.1 Gossypium hirsutum HSF18 (HSF18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486952.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ51e-157HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A0B0NGH70.0A0A0B0NGH7_G
STRINGPOPTR_0001s32810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-152HSF family protein